Problem with assets

Hi

Lastly I've installed phalcon on my server in latest version. Unfortunately some problems appear. First thing which I had to change was protected initialize function to public function because I've had blank page without nothing. And now I have this problem that when I use javascript_include or stylesheet_link or image or whatever to place assets on my webpage, I do have url with index.php. So for example when my normal url is:

<img src="/img/logos.png">

now I have:

<img src="/index.phpimg/logos.png">

What's the problem?

How did you create your project? From scratch or from devtools?